Scaffold Ga0070749

Basic Information
Taxon OID	3300006802 Open in IMG/M
Scaffold ID	Ga0070749_10001247 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	17263
Total Scaffold Genes	43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (27.91%)
Novel Protein Genes	10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (50.00%)
Associated Families	10

Scaffold Components

Scaffold Length (bps)

17263

Total Scaffold Genes

43 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (27.91%)

Novel Protein Genes

10 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.12	Long. (^o)	-75.25	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.12

Long. (^o)

-75.25

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000716	Metagenome / Metatranscriptome	923	Y
F019119	Metagenome / Metatranscriptome	231	N
F025233	Metagenome / Metatranscriptome	202	Y
F032245	Metagenome / Metatranscriptome	180	Y
F037129	Metagenome / Metatranscriptome	168	Y
F047578	Metagenome / Metatranscriptome	149	Y
F060730	Metagenome / Metatranscriptome	132	Y
F077051	Metagenome / Metatranscriptome	117	Y
F077197	Metagenome / Metatranscriptome	117	N
F078606	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070749_100012471	F078606	GAG	MIRFKMFIVACVGSVLSWLLVKTALIDMNFLQFLAIEFIVGFSHYAYNDIKLKLQE*
Ga0070749_1000124710	F019119	AGG	MEKDIRREMESLSAQIAEEHYNITDGVDQNLHYLWYMYHKGSKAGMFRPFVYMAELQLLKHMGYINDVEIKNMIHMLESEDQDNLHMVTLSIKNFRKLRLEEHGEYSKVNQAYWKVAKNYAHEILNHEIFMQTMAAK*
Ga0070749_1000124712	F037129	N/A	MSVNKKNYKIVEEQYGYETRYVVKKRVLCFFWKTAKNKSGSDSVHITKRSAQAYINFLK*
Ga0070749_1000124716	F060730	N/A	MGRMKEYYMEIMEANDGKIPEELTIADVARMKELRIYNWQEYEREQEKIRVFKIKQENPREITKAAQTKEYWDNQFKRAETKIILKGE*
Ga0070749_1000124718	F047578	GGA	MRVICIDSTNKPAKVPVEQWIKEGEVYTIIKIVQMGLQNGKHGVLLKEVQMSADCFPYEYYDADRFIPLDLRVYELQEEEPEVLEADLDLI*
Ga0070749_100012472	F032245	N/A	MQEVFNKLIKAGLTPNSFYVLYCMYNKVVPDKSVNASLEVSRLKSGNYLTENLELSGNTLKFIQEIEGYFKKSKKKTSKALMGDSFLENIKTYNELFPATKLPSGVYARVNVKSLENAFRWFFQEFDYSWDTVIQATELYVEEYSITKYNYMRNSQYFIRKQNTDKTWDSTLATYCDMILRDDYQQTVFFKENIV*
Ga0070749_1000124723	F000716	AGG	MAPFFMILKMYIMEKLKKQVRDYQLYAGKTYVQYESDGYTAYQNYLYKRALYGLSALTEKELATMCSKKKQRIINVYKRAQVTLNKFKQQVTIKYSNLIFEKLFPKSPITQFLLADNETDEKFKNTLTFKDLGIEKKDIITIFIAEGILPKNFLDLKDAPLALPRLKNDKG*
Ga0070749_1000124734	F025233	N/A	MHLVIANLMFVLKLHSGIIIPTDDVDGRTIYSIPSAGIEYAYKAEIIQYLETGKFNYDEDLED*
Ga0070749_100012477	F077197	AGAAGG	MFLPIEFQDSDGPYFEHLNVVHITRISFINPRNPDAGARIHLRTGEVLSTKMPFDQLSQAIDEAWESASALVLSTLLSEKAQLIPSGSLQSGEKKVILGDSEV*
Ga0070749_100012478	F077051	N/A	MTESDLTNLGFNKVEVNDLESQNGYDYFYYTLEIFENLTLCSVDSDRVQDGNWYVMNLDWPDNFRLQSPQELLSFLQTVGYQRV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0070749_10001247

Overview

Ecosystem & Geography

Associated Families

Sequences