Scaffold Ga0070749_10002050

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0070749_10002050

Scaffold Ga0070749_10002050

Overview

Basic Information
Taxon OID	3300006802 Open in IMG/M
Scaffold ID	Ga0070749_10002050 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	13618
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (72.73%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.12	Long. (^o)	-75.25	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020902	Metagenome / Metatranscriptome	221	Y
F077364	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070749_100020503	F077364	AGGAG	MAAIIEGVNNQVTIYKDGQVTTAQEGRRENETTSELNRKLADGWSTTPQVSTPPPVPYNPRTASQGYNLATTLFGFMPEEVLKAYAAEWVKSGDSNVAIGATRQTKAWKDNFGKLMRDDGTLVMDELSFMSVKASYKQTLAEVGIADFTDFEDEFTDMATGYETGDPVSAEEFQVRVDTVYAGVKDQIPEVEKLFRERYNLTLDQPTIFAALINPKIQDKVLAGEIATIQLQAQASSRGFTTSFARFDELRKMGLTAAQASQLYEGAGGMISQAASIGRDLSLETLEEATLGDEASAERLRRINAELQSKQGIQLGSAKKGGEVTGLIAD*
Ga0070749_100020509	F020902	GGA	MEEFVEAEFWDMVYNEYGVMDELDILSEDITEIITPSKGIIILITKDFYNGKK*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.