NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070749_10010842

Scaffold Ga0070749_10010842


Overview

Basic Information
Taxon OID3300006802 Open in IMG/M
Scaffold IDGa0070749_10010842 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5893
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000369Metagenome / Metatranscriptome1222Y
F072321Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0070749_1001084213F000369AGGAMDIELADHFDRMNKVVEELLKGNNPTQIATVTGFKRAEVLEYIDEWKQVVRNDSGARDRAKEAISGADQHYAMLIKEAWRTVEDADQAGQLNIKATALKLIADIEGKRIGMLQEVGLLDNAELATQVAETERKQEVLVKILKEVTATCPKCKMEVAKRLSQITGVVDPVVIDAEEASGS*
Ga0070749_100108428F072321AGGAMKLAELVKIKANRVLGIDASTNSVAFCLMDNNEPVRWGKIEFTGSDIYEKIYDAKVKMHAMLPQLKSDYIVVEGAVFVKSPDAVIKLSYVYGVVIAELMSTGAKVMTISPTSWQAHIGNKNPTKMEKDNLRFENPGHADSWYKAKMREIRKQRTVDYFNKKYNLELDDFDVADAFGIAHYSNTVLTER*
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