Scaffold Ga0070749

Basic Information
Taxon OID	3300006802 Open in IMG/M
Scaffold ID	Ga0070749_10042049 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0070749_10042049 Open in IMG/M

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2807
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

2807

Total Scaffold Genes

5 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.12	Long. (^o)	-75.25	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.12

Long. (^o)

-75.25

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022895	Metagenome / Metatranscriptome	212	N
F068898	Metagenome / Metatranscriptome	124	N
F097404	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070749_100420492	F068898	AGTAG	MIASKAEIKALAFSNTFDMNAVKDNLIQLVEWEQVLSLFGADLYDDVVANPASYTTLIDTYLKPYIAYNVKAYLSKANHIKTGNKGAQTAQGSNEQIANVEFAKREAMNMATKYKRQMITYLDNTKPTLWKGEPKDDQIINKIIIM*
Ga0070749_100420493	F097404	N/A	VQKKIKNHPRKSQQTSFQVTNNVIQLPDYTDKQKIVTKQGLRIVSTVDNNLFPQKVSKLAKESSTLKAVINSFSEYVSYGALLTENMQLERKLTKDLNKYYNWFELAKRVAKDRRTYGYGFIEAIRKGSEVFVYHLDASQVRFMEYFGEKPEAVAISKDWNDTRIRPIERTLYPNYDEDGRTIIPIMEYESGMIDYPLPMWSGAFFDAQVESLIGQYNANQFENGVTLSSILMFDFGDTTDANGDAEKGLARQKQKLESQLKGTSQGRSGKSLIVPKSGDVEAPEYITYPMQKEGSFIELQKLVENNIVKACSWFRSLAGLESAGVLGNNQQLRNEWELAERLIRNEQDIIMEALQKAFKGTAYEGEVMFNNQSPMNVVNDLDAITTLLEKKDIIGEAAVYELLMMMGMDEEQAKTIVGNDSE*
Ga0070749_100420494	F022895	N/A	MAANLSLTAVAGSNCPRTAGVKELYTIPIADVDSITLGSDHDITNIVFKTAGVGFGKINFKRGECEVTEAMERSNQVEVNFAVANPTKEQRKEIQAIKDSCEQYMVARLYDGDRLLFIGYDEEFGDEAFAAFMSAESTSGRAKADHNLFSFTMMAEQGEFLRVLSGISGATPSPATTPAEIVAELEAATSV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0070749_10042049

Overview

Ecosystem & Geography

Associated Families

Sequences