NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070749_10051372

Scaffold Ga0070749_10051372


Overview

Basic Information
Taxon OID3300006802 Open in IMG/M
Scaffold IDGa0070749_10051372 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2510
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028157Metagenome192Y
F033428Metagenome177Y
F041769Metagenome159Y
F085645Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0070749_100513722F028157AGGAMSITDPKFATVLADHDGHSRWICHTDATDIMAAYRQGGVHILVTLDPEGQITVAFKPGRHWEATWSPPITLERK*
Ga0070749_100513723F085645AGGAGMNHDYAKPEPQPTAGADILTEAHQLVTGPRQDSYSHPYEDYWKVAQLFQSMTGIQLSIKQAVTFMICVKLARIATNDTKGRWHRDSVVDAAGYLACLSMVHEHLEDMRNDAVTRFKDK*
Ga0070749_100513724F041769AGGAGMSYDPDALRQMNEEAQLRIAELSTALAAVTEQRDNLEDSLNAAIQETDAAKAHIHVLTATIERLRLHIQQGVEL*
Ga0070749_100513727F033428AGAAGGMSPLEGCLVDESVVIILKARFAKLNDRCRLTIRDIADEANGSITMNQPTERRIGIARILLEIAENDGHVDKDLVRSICELRTGKKYNTAGEALADLSWVDAERVWASFQDIYADRVQLEYIPVSNNYTIKEYSNVR*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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