Scaffold Ga0070749_10371677

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0070749_10371677

Scaffold Ga0070749_10371677

Overview

Basic Information
Taxon OID	3300006802 Open in IMG/M
Scaffold ID	Ga0070749_10371677 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	792
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.12	Long. (^o)	-75.25	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F074876	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070749_103716771	F000473	AGGAG	VSSSHFYDNSHFKYGINQWTGEPNKPVFYNEEMKKRVREIKKPMLLLMDIAMYPDFLALRLYEDNFLQFDGSKKEEVIDYVSKVKKLIESYGVRCELEGVPSGRVL*
Ga0070749_103716772	F074876	GGAGG	VEEYYDIINVVFIHEEGIYGTVDKLGAFASVVKYQKDGLDYEVLLENDEFAIVDEIVFHHVEEDNG*
Ga0070749_103716773	F000671	GAGG	MDKILCYSCNKSKHKLNAKKSSLLPINLLMCETCINSKLEPRWLIILAGRSNGADYVREFVLKKRYLGNEISASELLV*

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