NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079221_10710238

Scaffold Ga0079221_10710238


Overview

Basic Information
Taxon OID3300006804 Open in IMG/M
Scaffold IDGa0079221_10710238 Open in IMG/M
Source Dataset NameAgricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)702
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil → Agricultural Soil Microbial Communities From Utah And Georgia To Study Nitrogen Management

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.8834Long. (o)-83.4195Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021421Metagenome / Metatranscriptome219Y
F079264Metagenome / Metatranscriptome116N

Sequences

Protein IDFamilyRBSSequence
Ga0079221_107102381F021421N/ATSGTGWDVGVLYDWTPAVSVGGVIQNIGQPVVRDSTLRLTYVPSATLQLAGRRVVLSALTRFTSDGVAGYGFGLRGTLRAGTSLPLGLLARLDTDRSLHRSRLAFGCSLGGEDAAGLVATLPGDAHRIDALSLYGVSTRRFTSARRSKP*
Ga0079221_107102382F079264N/AGADDSTLLLVARRSVVVVTPHGVRAYRRDSVQLRYGAELRGGLSFRLLLALPRARRDTVFRHLSFRDVYELVRRIGKLN*
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