NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075464_10007319

Scaffold Ga0075464_10007319


Overview

Basic Information
Taxon OID3300006805 Open in IMG/M
Scaffold IDGa0075464_10007319 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5322
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (69.23%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006696Metagenome366Y
F024973Metagenome / Metatranscriptome203Y
F051120Metagenome144Y
F071151Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0075464_1000731911F024973GAGMIWTLVLVTGINMNSILVIGYFEYEAACQKAAKEWRDLGYKVGCVQTQKK*
Ga0075464_100073193F006696AGGAMKFFKFLKDYYRDLTPAEVIQRALSDAHLDRLEAEAAVEYAKAVLDMNMTRIERLNTRLGEYK*
Ga0075464_100073195F071151AGGAGMNTCCDYGKCTNGPDCPVRKQRIKEINDAYSNGYNDAQLGDPIEDVADTFKALIALIALVLGVFVICLAFWGK*
Ga0075464_100073199F051120N/AMTDLPNFAAWNHETLAKFAVDAYLRMQAQQDAIEQLRGDLKDAMIEIRRVHLYVDSANP*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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