NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075464_10017323

Scaffold Ga0075464_10017323


Overview

Basic Information
Taxon OID3300006805 Open in IMG/M
Scaffold IDGa0075464_10017323 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3673
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001055Metagenome / Metatranscriptome791Y
F001298Metagenome / Metatranscriptome727Y
F001725Metagenome / Metatranscriptome645Y
F017613Metagenome / Metatranscriptome239Y

Sequences

Protein IDFamilyRBSSequence
Ga0075464_100173233F001725N/AMAAINNGTTCLYGVAGTVTNLYVQSYSLSSSFNAEATVVDESGLTKTHRLDDRKSEITIEGICKTSTMPSLGAAISFTLNAATAYPSGAASVSFAGTITKIDEKGSNKGFTAVTVTAIDYEGITPA*
Ga0075464_100173234F001055N/AMGTKSIRHIVESTLATYLAAQTDLTTIAFLTGDSATTQTLPKAIVLCESARAPGDLPEGLGNYACSVRITLFSNADDTTLADHRLRCAALAGNMRDLTSIKAAFTSGGDASCYDVTIGSEDEGVDERSWATAFSYDVLVVLPAA*
Ga0075464_100173236F001298N/AMSLYSEFLADAKEMVADFGVAGSCNSGAITFSCLISDPAVQTVLEAGGYCERTQYSVRLPAVTASWSQPDGSIGASAALLSGGAPIASLAQGKKIVAGGKTVRITTQTYKPGSAWITLVVIDDNQ*
Ga0075464_100173237F017613N/AVSTATAFSTGGYLTQDDATITSATVSLTQYKISSRFTPSNLKDYGADFFVNNFVQTASIGLAQKVMDVINTQVTAANYSVSSTSGADLSYAELVAVQKTLDDAKAPSPRYAVLNSTYVSDLRKDTTIVGNNVLGANIIRDGDLGVIAGARVYQFANLSANSENLAGWVAGPDAIAFAAALPDSADIPGFEVSNAIDQDTGLGVQVLVGMEQSGYLNVTATLMFGAAVGRATSLVRLKTA*
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