NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075464_10255325

Scaffold Ga0075464_10255325


Overview

Basic Information
Taxon OID3300006805 Open in IMG/M
Scaffold IDGa0075464_10255325 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1049
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029049Metagenome / Metatranscriptome189Y
F030767Metagenome / Metatranscriptome184Y
F066777Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0075464_102553252F066777GGAMSELTFIKDGLATTIHDNGEVTVVAAKQCDQCNEWHTEMGGFNVRDVSGEVVLWLCAQCRA*
Ga0075464_102553253F029049GAGGMVMRTMPSVAKVVLDRSQEITAHRVGLERTITRNAEIQDASNFGQVYKNWHELVWQESEAAAAEIAVANYFGDYGFVPSIDNAHDTADVGDNIEVKWTKHTNGHLILQNRGPGRPTDVAILVTGFSPVYVLLGWMPVHMAKQPRYKHPHQNNYWVPRSSLFEMQYLKRSNYGDV*
Ga0075464_102553254F030767GAGGMATYKTKCRLCARITEHIERVVTDNLPPYVKTLQCVRCGVMGVVMMEDVK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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