Basic Information | |
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Taxon OID | 3300006806 Open in IMG/M |
Scaffold ID | Ga0079220_10210160 Open in IMG/M |
Source Dataset Name | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1131 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil → Agricultural Soil Microbial Communities From Utah And Georgia To Study Nitrogen Management |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 33.8834 | Long. (o) | -83.4195 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F007430 | Metagenome / Metatranscriptome | 351 | Y |
F009705 | Metagenome / Metatranscriptome | 314 | Y |
F009911 | Metagenome / Metatranscriptome | 311 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0079220_102101601 | F009705 | N/A | TLAERQSLMVPSEDPGYGDLGQAFPPWPGPARGAILQPPKPEIRPCPQVLERATDRDADREAAD* |
Ga0079220_102101602 | F009911 | AGGAGG | MTAIAITGMGLTGVLRITWVHDNLAHVLDHSHTDETSGTWTGLAGPGHGLALGTDVDDATLRHLAAGSEIADLTWEAPDKLTAGHAEVVQAAMRAHHAGNAELAD* |
Ga0079220_102101603 | F007430 | GAG | MQGTGLTRFAPVKPQHWVVASFEHHTSPHGLPRPHIHNIALPRLTTAVNTR* |
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