Scaffold Ga0079220_10714393

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0079220_10714393

Scaffold Ga0079220_10714393

Overview

Basic Information
Taxon OID	3300006806 Open in IMG/M
Scaffold ID	Ga0079220_10714393 Open in IMG/M
Source Dataset Name	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	739
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil → Agricultural Soil Microbial Communities From Utah And Georgia To Study Nitrogen Management

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	33.8834	Long. (^o)	-83.4195	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016319	Metagenome / Metatranscriptome	248	Y
F019181	Metagenome / Metatranscriptome	231	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079220_107143931	F016319	N/A	RRWFSFLPSLSLTWQTALAGAFVLILTVSAGWIYFHRSIVDPNPDHQSLLKSRALREVESAETAYERAIDKLATEAKPQLDNPATPLLANYHEKLLVLDSAIADLRAQAGLNPSNAQLRYQLLAMYQEKQHTLEEVLEARQR*
Ga0079220_107143932	F019181	GGAGG	MNRTQSIFRRGLPRLTLVAGVLSVLLAAEPMFGANAQEQVTKDFQKSVTLGAGQSVRVEHKFGEVRLHGEPGREVKISATIRVQAYTREEAESFAQKIQIDVQQ

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