Basic Information | |
---|---|
Taxon OID | 3300006810 Open in IMG/M |
Scaffold ID | Ga0070754_10000358 Open in IMG/M |
Source Dataset Name | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 43909 |
Total Scaffold Genes | 68 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (13.24%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 6 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Delaware Bay | |||||||
Coordinates | Lat. (o) | 39.12 | Long. (o) | -75.25 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F026406 | Metagenome | 198 | N |
F037176 | Metagenome | 168 | Y |
F041491 | Metagenome | 160 | Y |
F044200 | Metagenome | 155 | Y |
F059454 | Metagenome | 134 | Y |
F087907 | Metagenome | 110 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0070754_1000035812 | F037176 | N/A | VRKICYTLLFILFSCSGLETPQGETNVIINNDLDSLIKLADEAIDNLNNKKEQTKEAQLKLNKRLLAISNLKDRYKDSIGDLTSLKLINRDSVIYDYRVEIHEIVDSVEITIHIPDSICHVCTRKKERSLLNIFKKKKNKNYEKSNL* |
Ga0070754_1000035821 | F087907 | N/A | LDKPTKRYNIPIWLSQWTFIDGNKKKYLLNNFIVKGHNKGEIFTNKKIVNKAVNKLKRGRKKGKIVPVNLSLISQHGFGVNDN* |
Ga0070754_1000035828 | F026406 | N/A | MKNSVVFEGGIDKVSTLADGSLRVYLGTPELSNETMVNLFGLIKKPGYVLISTNTINQDQIDAVEKATTNAEFSEKTPSQRMRGVLYKLWEKTQPKTMNGDSGEIEYVDFDLFYKRQMNKIIDHFKTKLD* |
Ga0070754_1000035834 | F044200 | N/A | MSALPFNLNATTTKRAVGEKVEYITPGAHECKITGLTTSEQLEDYKGSPFIQYAVTSNGKVGRCRFWVVKETDKQSTQEWKSKQIKDFLVNSGVQDFSDDSKAMNEAIGNSLMVTFISEEYISKNRDNQEPVIRTATKYRWSAKSGGKCTYNNDMNQTLTDDQMADFSKQHSDWSNANSSMNAAASDDDMPF* |
Ga0070754_1000035853 | F059454 | N/A | MKSYLLKKLIAGYKVNPRHSGLELVALPYKYTNEKILVRHSDKKMVIDQDTPLLGEQTFPDKFGRDKTYTLYYYQWQPSKNQIKLEL* |
Ga0070754_1000035854 | F041491 | N/A | MNKTETTISFNVSKNINIGNFESVKINYGQSITIDPTKPLAIQREKLIEECYNVVKKETQIWQGLKAVQHVDSQKNTKATKAKSSYSSFADQQKH* |
⦗Top⦘ |