NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070754_10001037

Scaffold Ga0070754_10001037


Overview

Basic Information
Taxon OID3300006810 Open in IMG/M
Scaffold IDGa0070754_10001037 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23040
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (45.24%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021298Metagenome / Metatranscriptome219Y
F029416Metagenome / Metatranscriptome188Y
F033413Metagenome / Metatranscriptome177Y
F055691Metagenome / Metatranscriptome138Y
F066765Metagenome / Metatranscriptome126Y
F087139Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0070754_1000103711F021298N/AMSKSVMLSLLAQGNNGNEILQILDTLIEDNQSDVAVAQPTADVIEF*
Ga0070754_1000103712F066765N/ALTLKTHTLTNTLMLNFIPYAIRRPFYYVFDLIVCSDFRSEELSRIFDAYEYEQSMQILGFVNYLGITGQLDLKENFSLFADVQDLEQAINKWNEYKAQMNTSVPA*
Ga0070754_1000103716F087139N/AMLLSKASFTDQQLPPFIIQKEAERTEEGSYSLHLFSRTVITKEGKKFRFLPLRFEGELARFRKRKDAEDYARYRLALD*
Ga0070754_1000103721F029416N/AMSKTDMNNQELSKQIYRELFTEDQWDLIYNFIGNALDDDLFNPEDVYAIRNKIHLLFN*
Ga0070754_1000103722F033413N/AMTVHYANLFAQNTDLTAEFVTDFSRTFKSSTFDTYTRNDGKVYIKHSVDRNFKNDVFSVEAMIYEYKGCWVGNQKNFGKFDVFADAIACARNVQLPQDSITQNEAFALMSN*
Ga0070754_1000103726F055691N/AVGPVKCPSSMMTYTSPLTSKVYEIIETSHIRNAWDSQGNLAPYVQSAFDIYYNGQKVQFALTAEGVADSVAHLENPGPDVSSRFD*
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