NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070754_10001388

Scaffold Ga0070754_10001388


Overview

Basic Information
Taxon OID3300006810 Open in IMG/M
Scaffold IDGa0070754_10001388 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19525
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (24.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005194Metagenome / Metatranscriptome409N
F009788Metagenome / Metatranscriptome313Y
F087884Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0070754_1000138811F087884N/AMEHTKSYNITVGQYQELNAIDDTLSLVEQNIYAVAAIKNITYEEASKIKMSEFKKLVDEINDFNVKLLEKLRIKSKIFLNGTEYYLEHKPDKLTSGQLLDVINIRSKNQGEAVKVMHLLLAAMSRPKGGEYGDDKLNLEERAKLIKEVDLPDVWNVFVFFWNLWNDYLNDSEDSLSKWMGETLAMTKQILDKDGDYLA*
Ga0070754_1000138822F009788N/AMSIQSAEYEVNATLAAPVGVNNRYVKFTLVEGTQDLPNATIELPNNGDYPYKIVNATTLGGTEGIEIHRGILRLKQPQEVVYSYTDEQNTYIYE*
Ga0070754_1000138825F005194N/AMEGIKAEHPQINTILKGNIWDVDLTKDVTGSYLIYDIANITPNGFNGIDYSLDIFLCDNVTEINTESNEVSVQNECCLIALDMMSIFENYNKASYADKDIALVLNKNWSIQPFTERFDSLYS
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