NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070754_10040473

Scaffold Ga0070754_10040473


Overview

Basic Information
Taxon OID3300006810 Open in IMG/M
Scaffold IDGa0070754_10040473 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2530
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002390Metagenome565Y
F008400Metagenome334Y
F048911Metagenome147N
F072846Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0070754_100404734F002390GGAMKHAKQLFPIALQELIEIGEKARKQRQDKERAMRVALPRKPGACMHAACKEKQLKLELQTRI*
Ga0070754_100404735F048911AGGAMSKPAQNIDLWKQANSTLENIEEELRKARFHNDTESIEYFLKEKRETHALLTQLETKGETA*
Ga0070754_100404736F072846AGGAGMRIAAHKQSPKLTSFEVFAYKQIKGQRACIKVLEVEARTAQDAGKTGQTFSKMMSYEYSHVREVR*
Ga0070754_100404737F008400GGAGGVSKQDNNDLLPKLALGMALFIAMKFVPKVLAWWTKRNKKQGEI*
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