NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070754_10040519

Scaffold Ga0070754_10040519


Overview

Basic Information
Taxon OID3300006810 Open in IMG/M
Scaffold IDGa0070754_10040519 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2528
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (100.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032640Metagenome179Y
F073494Metagenome120Y
F074857Metagenome119Y
F087434Metagenome110N
F101078Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0070754_100405191F101078GGAGGMEMIKRTGIIKVSQEGIAQEIVMRLQGVRLNKVDSVMIPLRYKPNHYI
Ga0070754_1004051910F032640GAGGMRVIDSKISTLISRGLKGEAFDRRLSKRDRVVSDGTGKVRVILWNTEIATFDAQVDEITVKSGSYQTVTTKSRINAMLYGWAKGNPSISQRKWVWYLDTLCPLTKDRKSQEFQGVASFPLKVWR*
Ga0070754_1004051911F074857AGGAMTNQMNMRKTLSYREVAAQAQKLSEMAYLEACQPKELRNQVLMNHCYKQAKRLTNRLKNAGYWKNSVISLG*
Ga0070754_100405194F073494AGGMVSDKVWESREISMWVNNDESLHKLARQSESSNDFFDVLEMIGVFQLGGIKITPQNVKESWEDANG*
Ga0070754_100405199F087434AGGAGGMEHKGMKYLEAHKRWISQAKELIPQVPDFKPDFVKSLNERIDSGIPLTPKQFKSLKKVVWYLKKQTEGK*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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