Scaffold Ga0070754_10081503

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0070754_10081503

Scaffold Ga0070754_10081503

Overview

Basic Information
Taxon OID	3300006810 Open in IMG/M
Scaffold ID	Ga0070754_10081503 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1631
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pelagibacter phage HTVC204P	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.12	Long. (^o)	-75.25	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F019389	Metagenome	230	Y
F040863	Metagenome / Metatranscriptome	161	Y
F042019	Metagenome / Metatranscriptome	159	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070754_100815033	F040863	N/A	MEKKQIEKIQKRINEITSILDTERDWNKIDSSALLTERADKEFLINKIGVNIRLTGNNKYYWGYQFVEFRKNIDLYGSNYGYKDIIGSKISFHKYSINQEYSQYSNDLWRFDSVEEMKGFVKGYNVMCSVLENKQEKKVA*
Ga0070754_100815034	F042019	N/A	MSKGEKLILLVSSEVSIAPNFLMEDSNFVKKAKKLIKQKLDFDTVKDKLVDWCKNNY*
Ga0070754_100815035	F019389	N/A	MDNWKDDFIKFVNKLSKKKGWKCDDLNPYFYQIDLLHLSNAKTLREYK

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