NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075428_100009317

Scaffold Ga0075428_100009317


Overview

Basic Information
Taxon OID3300006844 Open in IMG/M
Scaffold IDGa0075428_100009317 Open in IMG/M
Source Dataset NamePopulus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10888
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (76.19%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location NameUSA: Tennessee
CoordinatesLat. (o)35.8443Long. (o)-83.9607Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016875Metagenome244Y
F028614Metagenome / Metatranscriptome191Y

Sequences

Protein IDFamilyRBSSequence
Ga0075428_10000931712F016875GAGVTTSGALRIARYAEAAYAAIGIVLAFGIPLPPRGPALVLFAHWIGTSLLAAAICLRLGRPNRQTWYVAALLSVYVLFNAVVAIARLVGPESATLGGPGTVALAVGAVVSITQIVVAACLYQARELRTMPSRSSIRR*
Ga0075428_1000093179F028614AGGMGTNGAVRYVKVWIELLAEDEGGRRTPLDLSSEWPVAYRPQLRMRGGHGRLIDVEFVAGPSEPVTPGAGAYATIRLDGPAGAHAALVVGAEFDVLEGPRLIGHGRVTSR*
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