NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075428_100638024

Scaffold Ga0075428_100638024


Overview

Basic Information
Taxon OID3300006844 Open in IMG/M
Scaffold IDGa0075428_100638024 Open in IMG/M
Source Dataset NamePopulus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1136
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location NameUSA: Tennessee
CoordinatesLat. (o)35.8443Long. (o)-83.9607Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005598Metagenome / Metatranscriptome395Y
F008391Metagenome / Metatranscriptome334Y

Sequences

Protein IDFamilyRBSSequence
Ga0075428_1006380242F005598AGGAGMSESDLPDADIDRINSLEANSWWRRSTSAGALLNRLMLLFIVVPIALVLKGFYTLSFLVFALMIPYGFLLRRLAVRAVLHHLVEHPEDREHFEQTGIISC*
Ga0075428_1006380243F008391N/AAAEVKPKLVPIAVEGTKDEFLVSESDVDALLSFKPPEASVNFIPYRDTYLKGQREVVNRFVAEEHADKPFSRWKGKLINDPLATILFNGRVIGVWEWNDDEEEVDMLLFESNIPKSVDKVIHKRAGELANFIRANLGEVRLQGSDYGPHQMTGIHDLKAFWGKGAQVDVRV*
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