NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075421_100014470

Scaffold Ga0075421_100014470


Overview

Basic Information
Taxon OID3300006845 Open in IMG/M
Scaffold IDGa0075421_100014470 Open in IMG/M
Source Dataset NamePopulus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9840
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location NameUSA: Tennessee
CoordinatesLat. (o)35.8443Long. (o)-83.9607Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043495Metagenome156Y
F101955Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0075421_1000144703F043495GGAMGDLPPTPPTRRNEQHRCAHCGSRFEIWHAADTLGTYVSVDVSCPCCHAQTAVSLPRGAEKDLRVNNLPGTEPDTGVVD*
Ga0075421_1000144709F101955GGAMLKMILIGAVAVPAIAAGSVAATGVVVVDVKEARGGQRIVVPVPLALAQVAAAFVPLDKTRVRLPREAEQYMPVARQVLEALAVAEDGELVRVEEPGQKVSIRKEGGVLRINVDDGDEHVKVQVPISLALSVLPEAGGHFSASDAVWALQHARLTEVVNVQGRNGEQVTVTVY*
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