NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075430_101170977

Scaffold Ga0075430_101170977


Overview

Basic Information
Taxon OID3300006846 Open in IMG/M
Scaffold IDGa0075430_101170977 Open in IMG/M
Source Dataset NamePopulus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)633
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location NameUSA: Tennessee
CoordinatesLat. (o)35.8443Long. (o)-83.9607Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002604Metagenome / Metatranscriptome544Y
F063898Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0075430_1011709772F002604AGGAGGMLGNLSKIGAVAAIIMIPTALSAQMGGAVNPGVHVGGTVNAGGAIRGAVVQGIPGPDFGTWRSPTGEVHRTRKHSKAATKQRR*
Ga0075430_1011709773F063898AGCAGMTALTTMDKLLCWLGLGAAQKGAGSKEVNPSRHWV

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