NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075431_100212311

Scaffold Ga0075431_100212311


Overview

Basic Information
Taxon OID3300006847 Open in IMG/M
Scaffold IDGa0075431_100212311 Open in IMG/M
Source Dataset NamePopulus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1977
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location NameUSA: Tennessee
CoordinatesLat. (o)35.8443Long. (o)-83.9607Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000823Metagenome / Metatranscriptome875Y
F000825Metagenome / Metatranscriptome874Y

Sequences

Protein IDFamilyRBSSequence
Ga0075431_1002123112F000825GGAGGMRRWMLAAIVSPAIVMGSLAAEAQSAWRSYIVKEFGFSFSAPGKVETSTGTFRGEVAGPRQTMIFKSTANNIEYKVTVMSFKQAQGEGATILGERTYMFQDKKKTLMDTYARVEPGKDSVYGRKMVVELAEGKGRTFGAFYFTNGRLIALEATVLPANGDYESPDPARFVDSVAFIASRAGENAIELQAPKTE*
Ga0075431_1002123113F000823GGAGGMRLTVLAILAGFVLATFTTPAAAQWRPYISHPLGFAFAAPGPMKVEKGTYEAPIAGRRQTTTYAFTDDNIEYKVVVIDMRDIAGNSASLLGEAQFRFQDGKKLMMDAFGRVDRQYGRKLTVDLPNNGGRSMGAFYFINGRIVSLQATVLPANGDYETPETGRFIDSITFYTVRADDDAIEVPPPG*
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