NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075433_10002161

Scaffold Ga0075433_10002161


Overview

Basic Information
Taxon OID3300006852 Open in IMG/M
Scaffold IDGa0075433_10002161 Open in IMG/M
Source Dataset NamePopulus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14887
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (68.75%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location NameUSA: Tennessee
CoordinatesLat. (o)35.8444Long. (o)-83.9599Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000531Metagenome / Metatranscriptome1046Y
F005261Metagenome / Metatranscriptome406Y

Sequences

Protein IDFamilyRBSSequence
Ga0075433_100021613F000531AGGALSSVKAIKGAEKGPVSERLARLLDAFSPWAGISLTYRQFAAEIGPPVTEAGIKKWPQRKKFPANVARMIVTRARERGVEGVTLEWVLWGEGAGPQKGLRESERQTEEPDGDFASRIAAGLQADLSHHEFGQWSSAEVQRTVIWALKDLARRLRVLQFDMGQTFELTDGWARDIGLPVRPRGATINTPSDQHA*
Ga0075433_100021614F005261AGGAGGMARKVEMLAVKADAVEGEAVLAREGLKLAEDMPLKEQVIFTGSSDWTPDQAEHYIDWRIQCIDSDIARLRQQLDDLIASRKRWLAVTGGRSKVFGISNGNGHGATTQA*
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