Scaffold Ga0075433_10015500

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0075433_10015500

Scaffold Ga0075433_10015500

Overview

Basic Information
Taxon OID	3300006852 Open in IMG/M
Scaffold ID	Ga0075433_10015500 Open in IMG/M
Source Dataset Name	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6255
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (84.62%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location Name	USA: Tennessee
Coordinates	Lat. (^o)	35.8444	Long. (^o)	-83.9599	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F055151	Metagenome / Metatranscriptome	139	Y
F087285	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075433_100155001	F087285	AGG	MVTKIIKWSAIAALIEGAFVRSLPSYGLLTQLVVVAAAAVVLTQAATMRRYIWMTLFLVVACVLNPVFPLAFSNYMFGMVSTLAVLLFFFSLDLLKPRLSIALITDHMPGRESL*
Ga0075433_100155006	F055151	AGGAGG	MKALLLAVLSLCFTVGVVVVAQTPPSQTLQRHPDARLTSMMGTVRAGGEKLMFVTDQRVWNVDNPESLEGHQGHYVRVEARVDADIGSIYITDVKQPTAGESRKNDIR*

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