NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075433_10046414

Scaffold Ga0075433_10046414


Overview

Basic Information
Taxon OID3300006852 Open in IMG/M
Scaffold IDGa0075433_10046414 Open in IMG/M
Source Dataset NamePopulus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3778
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location NameUSA: Tennessee
CoordinatesLat. (o)35.8444Long. (o)-83.9599Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016174Metagenome / Metatranscriptome249Y
F043553Metagenome156Y
F075801Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0075433_100464142F016174GGAGMFAEWTEPPPMSASAPAPALLSADGTLWLAYRIARDPHHCAVVRFHQVEEYAWGAPPAAHGLETVGELPRGSFYEVPAAAPGHPDRTGRRWLITFPDAMLEVRAGHGEVVLRATAALGPAHALAALLA*
Ga0075433_100464143F043553AGGAGMSSAARRRAAVFAVPMIVGLITAQRAAPHVRTVDFLLLFASGVLFGVSLMALVQQVRRGPPSG*
Ga0075433_100464147F075801GAGGMPYTQAPALTPEQWEARDYRQLARDLDGWAKAHSGAREDDATEYVAKLGLNQTGSVVVMNRAHDRVLVPPPARAPLAAFALAEQPFGFTAADVELLQVAAARSEDPGAVAALRDLGQRIQDLLPPTPA*
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