NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075420_100539945

Scaffold Ga0075420_100539945


Overview

Basic Information
Taxon OID3300006853 Open in IMG/M
Scaffold IDGa0075420_100539945 Open in IMG/M
Source Dataset NamePopulus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1007
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location NameUSA: Tennessee
CoordinatesLat. (o)35.8443Long. (o)-83.9607Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026217Metagenome198Y
F050961Metagenome144N

Sequences

Protein IDFamilyRBSSequence
Ga0075420_1005399451F050961GGAGGMKTTTPPKGMPWSAPVLVRKDGKKLAVELPPQVAADLKAGPGDVLNFTKLPDEGKNAGEIQIWVVKKGGYSSLKDMK*
Ga0075420_1005399452F026217AGGAMKVDVQESASPRELLALDSEKNENRIAEHPIWRSALDGSMPKARLKKLLLAFYPVVAGPGRYAFAAKVSQIDPQDGKQLFLQIHESLKNPVADADAGWKKVLVALGATPRELEAEPSAEAADLVDVLREHGLRSGPVHAAVIAFMLERHLPDLWGRLADSLQKHYGVKAAVLQHLRFEAGRAAKLEAWVKHLVDKYVVNADAYVMFEARRSAREALWAWTALTETV*
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