NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075425_100000012

Scaffold Ga0075425_100000012


Overview

Basic Information
Taxon OID3300006854 Open in IMG/M
Scaffold IDGa0075425_100000012 Open in IMG/M
Source Dataset NamePopulus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)194901
Total Scaffold Genes165 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)116 (70.30%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location NameUSA: Tennessee
CoordinatesLat. (o)35.8444Long. (o)-83.9599Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001368Metagenome713Y
F029793Metagenome / Metatranscriptome187Y
F048526Metagenome / Metatranscriptome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0075425_10000001212F048526N/AMNRLPILFRCGVTTSAIALAICSATFQAKAASWNGIEPFKSRRAEVTKILGQPISESADGTMRFNVMGGSVQVTFVNEKFVESKKLRPDLAGTVLEIVLQHDHSSDTPESLKLGENRSFTRDETQSSLIFRNPKDGIAYTFQRGTLRTTRYTFADGQLTRARR*
Ga0075425_100000012124F001368GGAGGMDRDAATTERLRQLVSKLESLTEAGDLHWERQAGSAHRYARWNNNLLILGPATPLSESSVPRYLFITPFDSPDCIEVNSEDAELGAAVTQLVNEVEKVSKAEPATDPFGITEQMLERLESM*
Ga0075425_100000012156F029793AGGAGMKLIRVVVFSIVCLIAITSIVVSNFAAQPAVSVAGVYENFTIGKGSGDLEGMRVVIVPAGGGYYAIVQIAQGGAEDPKPEFVPAEVKGKTARFTVGDEKYTATATAAGLTVKNSAGDTQMLKRKPCAAFFK*
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