Basic Information | |
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Taxon OID | 3300006854 Open in IMG/M |
Scaffold ID | Ga0075425_100000066 Open in IMG/M |
Source Dataset Name | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 94253 |
Total Scaffold Genes | 93 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 49 (52.69%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Tennessee | |||||||
Coordinates | Lat. (o) | 35.8444 | Long. (o) | -83.9599 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F009837 | Metagenome / Metatranscriptome | 312 | Y |
F012391 | Metagenome / Metatranscriptome | 281 | Y |
F084657 | Metagenome | 112 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0075425_1000000663 | F009837 | GGA | MIKIVCTSCQKPLSLDETKLPMKEVSFPCPVCKTKLTVDRRNLEMGAAAAPPQPAGPEGHDEPRDDAECFGEKTLIVGSDHPALRQAAKLIGCIPVHMPTAQQAREFFVQEFPPVVMLNPAQITAPPLESMQPIVSLTPADRRKAFFILFADNLRTLDGNAAFLYGVNLVVAFKDLGAFQQIYREALAYHERLYAPMTAVAKALTT* |
Ga0075425_10000006645 | F012391 | N/A | MEVMSDDKGATEDEVQKIDVIRGTEALGYDGGGRGEHSGENAPKAPSDLRGELADNTPKDIAGG* |
Ga0075425_10000006689 | F084657 | GGAGG | MKRTTERVSVWLTPEQIEWLKTKKNVSETVRAMVTEAMNLDRLKQSVAKKKR* |
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