NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075425_100012623

Scaffold Ga0075425_100012623


Overview

Basic Information
Taxon OID3300006854 Open in IMG/M
Scaffold IDGa0075425_100012623 Open in IMG/M
Source Dataset NamePopulus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9062
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (73.68%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location NameUSA: Tennessee
CoordinatesLat. (o)35.8444Long. (o)-83.9599Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028603Metagenome / Metatranscriptome191Y
F074514Metagenome119Y
F091601Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0075425_10001262312F074514GAGGMMHTRMVVVPVVLAVGLISCVVALAPVPGADKVRLTRNASEVSTCSAVGTVRVSASGSNARTEFRNTVVGFGGNIGLVTSGPAWGPVEGIAYRCP*
Ga0075425_10001262315F028603AGAAGMEQSASISRLTARARRLRIYRLLANSFPALLVIALAVFVFRWMFPWLFSILVFVWTADAFLLVVLAVPWLLVSWGLAFGKIKCPSCAAPFVSKFHLWVPKACQSCGYDITGPKNGATSNSSWKNP*
Ga0075425_10001262319F091601AGGAGVKQRVSLASAPGEWPWLGDVRAFLLIAVAAAMATDSAAVMAASFGSVRYDPSSDQLIVTMIYDGTNPNHHFSIEWGPCRKLDQPARQTIDVSFLDDQWNDAATKTYTKMVRVPLATLSCRPATVTLRTAPDFLTSLDI
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