NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075425_100018277

Scaffold Ga0075425_100018277


Overview

Basic Information
Taxon OID3300006854 Open in IMG/M
Scaffold IDGa0075425_100018277 Open in IMG/M
Source Dataset NamePopulus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7630
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (86.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location NameUSA: Tennessee
CoordinatesLat. (o)35.8444Long. (o)-83.9599Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F098101Metagenome / Metatranscriptome104Y
F100642Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0075425_1000182771F100642AGGAGGMFTTRKWEVGGDAGKWYTVVIERQGIRRVGYCALGCPGHNSSAEALAHH
Ga0075425_1000182779F098101GGAGMVRSGSLPAPVEVFYVVRSTGAPGRQEHHVASVLYETLAQAHTELARLSTAHPRDYSIWKSTTYVEPPQWGYVVMRADGTVLPPG*

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