Basic Information | |
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Taxon OID | 3300006854 Open in IMG/M |
Scaffold ID | Ga0075425_100024885 Open in IMG/M |
Source Dataset Name | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6594 |
Total Scaffold Genes | 16 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (81.25%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Tennessee | |||||||
Coordinates | Lat. (o) | 35.8444 | Long. (o) | -83.9599 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002508 | Metagenome / Metatranscriptome | 553 | Y |
F006286 | Metagenome / Metatranscriptome | 377 | Y |
F047286 | Metagenome | 150 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0075425_10002488511 | F002508 | GGCGG | MSNDDDKRPAFARSRNSEVSRNFHRLGLLVAALILAAGLLLMLKDALGLRLGDLIPADIPILAGGIAIGLTGIALASLAGYGVVRAIGWTIDRSI* |
Ga0075425_10002488512 | F006286 | GGAG | MSFNYLTNSSGFTRIAAYVGQMVDHAVDAQIEKISQNLRPDPATQCLNRPMDLSELMSRTIAP* |
Ga0075425_10002488515 | F047286 | GGAGG | MGTVTFLAPANPQWVSLELEMICVLRRLMGNDSSFGWCDFITLTEPRGPCAEFCDHFGPVVRLTRVDRRYEITCLRTGALKRTTNLGSAAALIRARWSAGVHTHPQGSIRDHAS* |
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