Scaffold Ga0075425_100276945

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0075425_100276945

Scaffold Ga0075425_100276945

Overview

Basic Information
Taxon OID	3300006854 Open in IMG/M
Scaffold ID	Ga0075425_100276945 Open in IMG/M
Source Dataset Name	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1931
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location Name	USA: Tennessee
Coordinates	Lat. (^o)	35.8444	Long. (^o)	-83.9599	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F055003	Metagenome	139	Y
F070296	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075425_1002769452	F055003	GAGG	MILLEKTLEILAALARQTWRYPLVGLLLMVAVSAVIAWRASTLQSHRWVVRKGICPCCGSALFGTTTAYQRLPGLDLVYPESPYLCLTCDRAKVAVLQRQAQLERADD*
Ga0075425_1002769453	F070296	AGGAG	MAALTLEAWRDRTLEQVHFAAQAALNAVVVQGHPRLRACVAATATGDLHQCLAQGPHIDAIRRMAHGMAVRGTAAPGFATTPDLKGALSLENLTEALHRLGVENTLCH

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