NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075425_101676591

Scaffold Ga0075425_101676591


Overview

Basic Information
Taxon OID3300006854 Open in IMG/M
Scaffold IDGa0075425_101676591 Open in IMG/M
Source Dataset NamePopulus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)715
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location NameUSA: Tennessee
CoordinatesLat. (o)35.8444Long. (o)-83.9599Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021881Metagenome / Metatranscriptome217Y
F048878Metagenome / Metatranscriptome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0075425_1016765911F048878GGAMPRFKLNDTLVLNGRRARVVWLRENPNEIETMDEYIVEFEDKERQFFVSSELEDGYLRKTA*
Ga0075425_1016765913F021881N/AMRKIARPDVIYSKPTMCLHCHLIVEMTHDRDADPVKGAWNCPRCNHVYPFLHWKIRKQTQRNNKAPIAA*

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