NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079044_1000408

Scaffold Ga0079044_1000408


Overview

Basic Information
Taxon OID3300006855 Open in IMG/M
Scaffold IDGa0079044_1000408 Open in IMG/M
Source Dataset NameHot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_C host_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10640
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → Thermoplasmatales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Yellowstone National Park
CoordinatesLat. (o)44.7219Long. (o)-110.7021Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032339Metagenome180Y
F078331Metagenome116N

Sequences

Protein IDFamilyRBSSequence
Ga0079044_10004081F032339N/ASIIAKIKPKPFSKEENASINKLYLRATLLMFAVTVASIATTLLLTYNAVIVRDILAEQNVFNIPRWATMGFVLGSAEYPLYFTAVFAVLAAVYLLYVRKIKEYRAKSLAIVILLILEFLAMIQPLGDGLNDALSYYYVATHGAHEFNYTHLTGCFYENTSSNAYIIYINSSYLHENTITANLSTCLPFNR*
Ga0079044_100040810F078331GGTGGMPEKNATLVVKLHKCHIFEKAPSSISDVTKETLHEEELAERAQGNEKFKLKKLNVDGFDAELYFDVKDMQNLKLGEVINLID
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