NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079044_1002556

Scaffold Ga0079044_1002556


Overview

Basic Information
Taxon OID3300006855 Open in IMG/M
Scaffold IDGa0079044_1002556 Open in IMG/M
Source Dataset NameHot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_C host_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3227
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Yellowstone National Park
CoordinatesLat. (o)44.7219Long. (o)-110.7021Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038746Metagenome165Y
F052280Metagenome143Y
F067919Metagenome125N

Sequences

Protein IDFamilyRBSSequence
Ga0079044_10025561F038746N/AKGNKYIMVVRTPKDLEDIKNNIDKYKNELKDGELIEVQISKSGKYTLKMMLSKEGVKYEISGEDKKNVLTVQNKDDAVALQKLIQILLAIAFNKPN*
Ga0079044_10025562F067919GGGGGLSTRSLSRGKELILINKGDEIEFLIDNVDDGRVWIIKPEYHTKKGIMVLEKRNGYIIRLIEKDLRKLGVRNMNELIELIRTRPSETIENLIGEKVKISKVTVKDLSNSNAED*
Ga0079044_10025566F052280GAGMAESQVLMIELKKYGFRFYLNDNPEKSWFINVNEIKPEYFSFVEEKNREMQNVSDYKYEDFGVQNILELLIGMILRPNESFEGLTGEKANIKEIHIFHF*
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