NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098066_1005927

Scaffold Ga0098066_1005927


Overview

Basic Information
Taxon OID3300006856 Open in IMG/M
Scaffold IDGa0098066_1005927 Open in IMG/M
Source Dataset NameMarine viral communities from Cariaco Basin, Caribbean Sea - 25B_WHOI_OMZ_CsCl
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2330
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameCaribbean Sea: Cariaco Basin
CoordinatesLat. (o)10.847Long. (o)-65.114Alt. (m)Depth (m)247
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032241Metagenome180N
F038425Metagenome166Y
F061287Metagenome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0098066_10059271F032241N/AKKSVLTYKVGGYTPSEIEKATNDEALRRGLTDAYLESEKQIGANVPRAIKYDLKTIETEGNHSPEEKRLLGKQFLLDFINQGSRTRDTESHFLLYQQKATKFLREVQHWNLSGLKTKEVSVLVGLIENVYNYFKEERRLNGQMFPRKAGENIFGAKETGRDSD*
Ga0098066_10059272F038425GAGMDGERSEVHCPHCDELLWWWAYASSYTGDGSAELGLGCENEKCEGHEVLPEDVYDAIVTEEERIDG*
Ga0098066_10059274F061287GGAGGMHKNDRETMIKELMTVKLRRKLLETMRDSEIQSLFSILKRYFR*
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