NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079041_1002487

Scaffold Ga0079041_1002487


Overview

Basic Information
Taxon OID3300006857 Open in IMG/M
Scaffold IDGa0079041_1002487 Open in IMG/M
Source Dataset NameHot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_B host_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3352
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Yellowstone National Park
CoordinatesLat. (o)44.7219Long. (o)-110.7021Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F080247Metagenome / Metatranscriptome115Y
F081547Metagenome / Metatranscriptome114Y
F087442Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0079041_10024873F080247N/AMIVWGKVIDCLLDADVNYLNGELFGNPLRIKGKFLVFGNLLIFEQTVKTPLSEEKTIQVCSPIDATFMTYYQGMVAIMSFYFRDRDLYANISLTDPETIKSFINMSSFYKKYGISIPNLLDKIMYRKVPT*
Ga0079041_10024875F081547GGTGGMPYLRGVFVNFDEETYYLSCGIVNGGNLDTDTYTVNQPSLMMARLGRDLYIVTSDLKQLIPVEPIKELLASETSKVYNEMLSQGNEVKP*
Ga0079041_10024876F087442GAGGMMKEGLVKAGNLVVDCKPCYIAGTGFVKDNVYVVSEGTVVFKWYDKIALITVSEEGVKVTLLDILDVRFLVERNEQCLVTKL*
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