NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0079041_1002490

Scaffold Ga0079041_1002490


Overview

Basic Information
Taxon OID3300006857 Open in IMG/M
Scaffold IDGa0079041_1002490 Open in IMG/M
Source Dataset NameHot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_B host_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3348
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Yellowstone National Park
CoordinatesLat. (o)44.7219Long. (o)-110.7021Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008949Metagenome / Metatranscriptome325Y
F011097Metagenome / Metatranscriptome295Y
F030159Metagenome / Metatranscriptome186Y
F076262Metagenome / Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0079041_10024901F030159N/AMKMLYVAPIFHQFQGYGGLSFAWTRDSVEIPYYPEMGTCRPYLTTLPDGKLKVTMGGYHADNYIDGIAIYIDKSVISPKGKTLVTVPSLIFGQTSPGGSYYVITGANPFNSIYHGVVAHTFGKKYARVYLNINAGNAGFINIYTRYRSRSAPDLQQMYGNSPNPNNTATYYPVVERNFGTLVYVTDYSFGMPYATDYARTSKLRVDDQVLWIFGSSNSGFGSLGTGPVFIELEGD*
Ga0079041_10024902F011097GGAGGMIRDVPLYTSGGTDPFTGLPVGGSPITGSGSNSRLLRFHPSYARLHIYITGLSGTSPSIQFTVGSYYGSNFYTLPPIISPQYVYIIGNENKTIITYLNTNAQVLQQVELPYNIFLNGVSVTWSVAGTSPSITTYIHFEFEDEEEGE*
Ga0079041_10024903F008949AGGAGGMSSQTVQLGTQTITPKVQDMGNSYYIEFQVKITKYSNNPVNHTIVVKFVCNKYKQVPSTNPLSPPTTVQKTIQECVDEWFDQHKSVYEVA*
Ga0079041_10024904F076262AGGTGGMSLNPVIKGSYTLAAPQTVSVAASSSSPVSISFTPLGAGELYVYITLPLGVSASISIGGQSVSLANGGNQFLIPANTPIGNITINNSNTTAVSVVVWVLFIEVA*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.