NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079041_1003014

Scaffold Ga0079041_1003014


Overview

Basic Information
Taxon OID3300006857 Open in IMG/M
Scaffold IDGa0079041_1003014 Open in IMG/M
Source Dataset NameHot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_B host_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2947
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Yellowstone National Park
CoordinatesLat. (o)44.7219Long. (o)-110.7021Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033508Metagenome / Metatranscriptome177Y
F047176Metagenome / Metatranscriptome150N

Sequences

Protein IDFamilyRBSSequence
Ga0079041_10030142F047176GAGGVSAMATRIFRFTISLAAGQANNGASGNPSPFTITAPSGINRRIVEIRPWGTQAFEYQGNYDTELYHDIDSNDINTYHRPHYVALDINGTHQYSIVITNNGSSSGTFGVDVVVEESALTGGGAAAPAAGGA*
Ga0079041_10030143F033508AGGLAAEAAAAPFVSPTTFRRISGSSTTQLTIPARIGHRHVLYDLFVTNPPAYGYADISVGTRIFMRIPFGAANTFSVFAPGNKFQGKGFLWSLSDLFGAEHLPNAAEDEDINITLNAAATRIDAYYAEIQPQDVSSHSVPGGSDAKIKPFIEVLDTLVTTTGNGINVLNENMPTGLGLLDANGRVKATTQFTLLTAFADYVSSGTNFTEYSRLHIYDEDEELFTPLNHEGLFIDYTITVGDLYMNMTIGQYWKPDQPYIFKPNHQISVTADVVAVTGTGSKLRVALIGIRERLG*
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