NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079041_1016664

Scaffold Ga0079041_1016664


Overview

Basic Information
Taxon OID3300006857 Open in IMG/M
Scaffold IDGa0079041_1016664 Open in IMG/M
Source Dataset NameHot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_B host_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)938
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Yellowstone National Park
CoordinatesLat. (o)44.7219Long. (o)-110.7021Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011097Metagenome / Metatranscriptome295Y
F030159Metagenome / Metatranscriptome186Y

Sequences

Protein IDFamilyRBSSequence
Ga0079041_10166641F030159N/AIYIDKSVISPKGKTLVTVPPLIFGQTSPGGSYYVISGNYGTGTIYHGVVAYTFGKKYARVYLNINAGNGAFVNIYTRYRARTAPDLQQMYGNSPYPNNTAVYYPVVEMNFGTLVYATDYSYNMPYATDYPRTSKFRVDDQVLWVIIKQSSSPVWIELEGD*
Ga0079041_10166642F011097GGAGGMIRDIPLYTSGGTDPFTALPVGGSPITGNGGNGQLLRFHPNYARLLIFITSLSGTSPSIQFTVGSYYGSNNYTLPPITSPIYIYVIGNENRTIITYLNTNWQVLQQVELPYNIFLNGVNISWSVAGTSPSITAYIHFEFEDEEEGE*
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