NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079048_1003044

Scaffold Ga0079048_1003044


Overview

Basic Information
Taxon OID3300006858 Open in IMG/M
Scaffold IDGa0079048_1003044 Open in IMG/M
Source Dataset NameHot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - OSPB_host_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2782
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (40.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Yellowstone National Park
CoordinatesLat. (o)44.733Long. (o)-110.709Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F061983Metagenome / Metatranscriptome131Y
F076263Metagenome / Metatranscriptome118Y
F081547Metagenome / Metatranscriptome114Y
F087442Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0079048_10030442F061983AGGVVPVKVFNDDGLLSEQEFDQVVKTRIYKGLKVLEIKDLGYDSFWRTTHYYELVVMSEGGGQFDCYYGDVIDVEKLKGVGAIVVKENDSEFVRTMKILVAKWYNKKLVEEEKAYEVCNTFVT*
Ga0079048_10030444F076263N/AMTSAEDLSAIFDDLEDLCARIPEGVIFHPTLEIRRKYANEEATYIKFDCRNHRYTITIIREGIARTARVSSREELFRRLFPEYFPGFAGIYTEEFLGEE*
Ga0079048_10030445F081547GAGMPYLRGVFVNFNEETYYLSCGIVNGGNLDTETYTIKEPELMMVRMGRDIYIVTSELKLLIPVEPVRVLLNSETSKVYNNMLSQGNEVRLL*
Ga0079048_10030446F087442GAGGMMREGLVEAGNLVIDCKPCYIAGTGFTKDDIYMVSEGTVVFKWYDKIAVITVGKEGTKVNLLNIIDVRFLVERNENCVAIRL*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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