NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079048_1004284

Scaffold Ga0079048_1004284


Overview

Basic Information
Taxon OID3300006858 Open in IMG/M
Scaffold IDGa0079048_1004284 Open in IMG/M
Source Dataset NameHot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - OSPB_host_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2278
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Yellowstone National Park
CoordinatesLat. (o)44.733Long. (o)-110.709Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008949Metagenome / Metatranscriptome325Y
F011097Metagenome / Metatranscriptome295Y
F023140Metagenome / Metatranscriptome211Y
F030159Metagenome / Metatranscriptome186Y
F076262Metagenome / Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0079048_10042842F023140N/ALHERILISNVFIGLATVPIYIFLKSFPFFIVFGAGILTTLTVLILFFYFLGAKFVGTWAILQKFAVTLPTSFVLAHLVKHLPSNPLLDYIILFVVGYVISTPLIFLTYYITMILYGKKR*
Ga0079048_10042843F076262AGGTGGMSLNPVIKGSYTLAAPQSVSVAASSSSSVSISFTPLGAGELYVYITLPSGVSASISIGGQSVSLANGNNQFLIPANTTIGNITINNSNTTAVTVIVWALFIEVA*
Ga0079048_10042844F008949AGGAGGMSSQTVTLGTQTITPKVQDLGNTYYIEFQVKITKYLNNPVNHTIDVKFVCNKYKQVVVPSTNPLSPPTVQTVQKTIQECVDEWYNQHKSVYEVA*
Ga0079048_10042845F011097GAGGMLRDVPLYTSGGTDPFTGLPVGGSPITGNGSNSQLLRFHPNYARLIIVITGLSGTSPSIQFTIGSPIGANFYTLPPITSPQYVYIIGNENRTIITYLNTNWQVLQQVELPYNIFFNGASVSWSVAGTSPSISAYIHFEFEDEEEDE*
Ga0079048_10042846F030159N/AYLTTLPDGKLKVTMGGYHADNYIDGIAIYIDKSVISPKGKALVTVPPLIFGQTSPGGSYYVITGANPFNSIYHGVVAYTFGKKYARIYFNINAGNAVLVNIYTRYRARTAPDLQQMYGNSPNPNNTATYYPSVERNFGTLVYATDYSYNMPYATDYPRTNKFRVDGQVLWVLTRDGYGPVWVELEGD*
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