NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079046_1033261

Scaffold Ga0079046_1033261


Overview

Basic Information
Taxon OID3300006859 Open in IMG/M
Scaffold IDGa0079046_1033261 Open in IMG/M
Source Dataset NameHot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - BED_host_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)710
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified archaeal viruses → Nanoarchaeotal virus 1(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Yellowstone National Park
CoordinatesLat. (o)44.7315Long. (o)-110.7113Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062912Metagenome / Metatranscriptome130Y
F087443Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0079046_10332611F087443N/AMGQRKNYWMNFLDSDNIDYIDKEITKTAVDLDLDPSEIRAWIFKAFIYDMEVKAKV
Ga0079046_10332612F062912N/AMDPSVILAETYNLFLVSDIIENESDIDKELEGLLADRDYNNMAKTIIYTLVYTVNNHLVYENIKQTYINDAIDLLYMVDRIGFDNERIMKKFIKLLYQFYSYSLQNRINFIADKEKREFVKAKLDELVHIVQWEQ*

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