NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079299_1010449

Scaffold Ga0079299_1010449


Overview

Basic Information
Taxon OID3300006862 Open in IMG/M
Scaffold IDGa0079299_1010449 Open in IMG/M
Source Dataset NameDeep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series LW 2014_7_11
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2125
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Ohio
CoordinatesLat. (o)40.178Long. (o)-81.073Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055683Metagenome / Metatranscriptome138N
F064669Metagenome / Metatranscriptome128N
F099193Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0079299_10104492F055683AGGAGMAQLNTTEQILQYALTQSGITQQDIVGGSLYCELIDADQAEWFRKDLQEKVSQDTEVKMYALGKGINRNRVEYVYDFVPKSEEIPAEVEHMVELEAEIARGK*
Ga0079299_10104493F064669AGGAGMANITRAQHPVEQWVQHITKTTPDLILGTLQHADLALAQQLAHEMQRRGLTAADILRLKNRKQPVSTT*
Ga0079299_10104494F099193GGAGGMYIMFDESRLKREFTEENLTAWAEYRAECHRANYYFKRDGWSEGTLWDWDPDKKQCTLQLRWGDDQNNLENYCHYEDLDEQEYLRQYDEYVLSVKLTDLVS*
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