 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300006863 Open in IMG/M |
| Scaffold ID | Ga0075459_1000072 Open in IMG/M |
| Source Dataset Name | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_>0.8_DNA |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 14098 |
| Total Scaffold Genes | 20 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (20.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Delaware Bay | |||||||
| Coordinates | Lat. (o) | 39.283 | Long. (o) | -75.3633 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001055 | Metagenome / Metatranscriptome | 791 | Y |
| F001298 | Metagenome / Metatranscriptome | 727 | Y |
| F039626 | Metagenome | 163 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0075459_10000721 | F039626 | N/A | LTWSNDKTNLLTMKPCDLKTRQLAELARQEKAKRDAVIVETYLRCGTIHATRKALDFTHSREVVRKAISKAGVYDKSKRDQVLIAKFKASPNKVTWVDRSYSKTHGSELHMQTEAEQMLKDACVAYPRHIQREVQVPGCQMRADLVGFNWAIETKKECSSQGMLTAMAQCLVYRKHLNKRHVCIMLPDDLEPASFYVSECLSYGIPVIKMSQLIWWVNTVQNDAQPN* |
| Ga0075459_100007212 | F001055 | AGG | MGTKSIRHIVESTLATYLSTQTGLTTVTFLTGDSAATQTLPKAVVLCDSARNPADLPEGAGNYSCSVRITLFSNADDTTLADHRARCAALSGNMRDLTSIKAAFTASGDATCYDVTIGSEDEGIDERSWATAFSFDVLVVLPAA* |
| Ga0075459_10000729 | F001298 | N/A | MSLYGNEFLDDAKEMIADFGVAGSANSGAITFQCLISDPAVQTVLEAGGYMERTQYTVRVPAVTASWSLPDGSNGASAALLSAGVPIASLAQGKKIVAGGKTVRITTQTYKPGSAWITLVVIDDNQ* |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |