Scaffold Ga0075459

Basic Information
Taxon OID	3300006863 Open in IMG/M
Scaffold ID	Ga0075459_1000178 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_>0.8_DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_>0.8_DNA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9220
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (44.44%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

9220

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (44.44%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.283	Long. (^o)	-75.3633	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.283

Long. (^o)

-75.3633

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F029387	Metagenome / Metatranscriptome	188	Y
F054788	Metagenome / Metatranscriptome	139	Y
F060847	Metagenome / Metatranscriptome	132	Y
F062686	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075459_10001781	F062686	N/A	RLAGCDHPVRRAVMLAHLLWAAVAVYAIHRVAEVAMAFAPVPPESTLPPAPVDVPEDLVAIANQERESWAQEEVLRVIRERYEDLKDWNRVRAAFGVGRIE*
Ga0075459_10001786	F060847	GAGG	VTVLLNSAGQPEPPTHVVKRLRALHAGLHLKFLNQTGEHWAVCMDWQPEDRRWEYVQRGETDPASTYDIIGYIPMLCSADEAPAYLERTFRQYPKDEIRNMADHVQQYNDTQPVAQAAEAALVEALETPVIASPRGRSK*
Ga0075459_10001787	F054788	N/A	VAVTKAQLIALTRETMDAVASERWSDATITRVLNSVYADEWSNILNAQPYYTFAKRTVTTDSDGMISFSDLNSGSGDSQQNFYRVLSVSDGNVLYTQTRFQDVPLATTTNYLPTYPRLYYTAGQALQILPVSASLSLYVFVNYRPTNFSDLASDSSVIDFPDANETIIANEAGARLLNKGGAESVAAKTLREEANLQRSSMLDDLRRYTINPTQMAYPDQKYDWSGG*
Ga0075459_10001788	F029387	GGAG	MARERLVDQQPGMEGGLNDVSDDISVQPNQLRRATNLRLTDYGAATKRGGTQRTSTNPLAAASVLNGFTFQQDSGTNQILAVSNTDLYTATFGTFPRTYTNQGGTLSTTVPPDFAQFRDSGGNDVVYIADGGLLNKWSGSALTENIAGTVAVDTLQVHNERLWACGNSTHPDSIFYSDLNNGDSLGNGSSGGGQIIVRTFGDETIVGLASINTSLLIFHRRGISRLTGYGQDDITTLPAGLTADVGTIAAKSIVANNNIAYFISERGLYRCNEAEVAPVGTPVKPDPILPIIRQLSSANFDKIRAVINRATKELWITIPGYGCYQYHTVLDSWSGPWDGGYIDPDTTALFETINSSGLPVILKGDASGWVSLCDAPGIYLDNVAAAGTGGARYAMTAQLHRLYCGDDAQAKAFRWGYLTAQLKGSDQCRIEWNSGDSFGSFSLPPSTDETWGASGTTWGDGTWGGTGSRNYRIPMGGTGYYVDISIIDSGEALPVFSRFSLETFALGRR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0075459_1000178

Overview

Ecosystem & Geography

Associated Families

Sequences