NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075434_100634584

Scaffold Ga0075434_100634584


Overview

Basic Information
Taxon OID3300006871 Open in IMG/M
Scaffold IDGa0075434_100634584 Open in IMG/M
Source Dataset NamePopulus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1087
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location NameUSA: Tennessee
CoordinatesLat. (o)35.8444Long. (o)-83.9599Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005023Metagenome / Metatranscriptome414Y
F030576Metagenome / Metatranscriptome185Y

Sequences

Protein IDFamilyRBSSequence
Ga0075434_1006345841F030576N/ARLIGGSLLPFSLNLQVGAARTDSANSTPALTTVTGAVGFSVPLPTPGISIEPYFSPGIRYHSSGGANTTQFGYVFGANLSFGLVGVHLAYDNERLKGGGNRGVFGVGAHLDLHLPLGM*
Ga0075434_1006345842F005023GAGGMKRAALTLGLALLATPAAAQWLGEPMWNDPTAGTGFTIYGDYSRPNSHAGGGTAFGGRVTLGAGIFTLTGGVSSWDPDLVSQRLLSVGGTAAFRLIGGSLIPVAVNLQLGGGHSFEVTSSTTTVPLQTMLHAAVGLSVPLPTPVVSIEPFVSPGVRYHHYSNVAPGAPDHEVHFGWVVGG
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