Scaffold Ga0079217_10009893

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0079217_10009893

Scaffold Ga0079217_10009893

Overview

Basic Information
Taxon OID	3300006876 Open in IMG/M
Scaffold ID	Ga0079217_10009893 Open in IMG/M
Source Dataset Name	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3030
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → unclassified Thaumarchaeota → Thaumarchaeota archaeon	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil → Agricultural Soil Microbial Communities From Utah And Georgia To Study Nitrogen Management

Source Dataset Sampling Location
Location Name	USA: Utah
Coordinates	Lat. (^o)	41.7655	Long. (^o)	-111.8143	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012397	Metagenome	281	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079217_100098935	F012397	AGGAG	LNKVLVMLALVTTFSLLSASSIAVGEIKNEIKVTPPLNWEPSPNNNSTSMVWFQNSTKSVFAIIKTPDNLGIPLFLVGPFMTGYLKYKDILEYSDKVTFGHSNLGHRYFLNLSSPSKLLNSSSGLIPKNDFLSEIPQGYDVPFKGMLILTQKQDDLFAIIFLNTKEKFDSMLKEIQPTLDSIELTPYTIMENRTQVKFDKFLLHQDSKIQ*

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