Scaffold Ga0079217_10262565

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0079217_10262565

Scaffold Ga0079217_10262565

Overview

Basic Information
Taxon OID	3300006876 Open in IMG/M
Scaffold ID	Ga0079217_10262565 Open in IMG/M
Source Dataset Name	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	930
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil → Agricultural Soil Microbial Communities From Utah And Georgia To Study Nitrogen Management

Source Dataset Sampling Location
Location Name	USA: Utah
Coordinates	Lat. (^o)	41.7655	Long. (^o)	-111.8143	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F030494	Metagenome	185	Y
F035366	Metagenome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079217_102625651	F030494	AGG	MERIAPGGRGAARQGDLVGTTVFWLTIALTVGTLVPFAVFPIMRPWLGCAVLLMWACFFTANAVRSRRTHSVISAPVYLLAAALLAANASGLVMVDVWMVWVLGAGIIAANVSERFVGRYL*
Ga0079217_102625652	F035366	GAG	MTITNKNDANKAAVLERLSAVRSALENSPQTHEVGRALEQCQRLEVAIERFHAEGLRFAAFTLLRMVFGHGTAFTEPVHIATQNLKSALEAAGYPH*

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